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YaqingLiu 4 anos atrás
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**Supported variant callers and annotation tools** **Supported variant callers and annotation tools**


* Variant calling: * Variant calling:
* * `haplotyper` (germline)
* * `tnseq`, `tnscope`, `varscan` (somatic)
- `haplotyper` (germline)
- `tnseq`, `tnscope`, `varscan` (somatic)
* Annotation: `annovar`, `vep`. * Annotation: `annovar`, `vep`.
* The above tools are <u>**not activated by default**</u>, which means the default setting is `false`. You need to manually set the caller to `true` in the submitted sample.csv. * The above tools are <u>**not activated by default**</u>, which means the default setting is `false`. You need to manually set the caller to `true` in the submitted sample.csv.



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