String clean_bam_name = basename(bam) | String clean_bam_name = basename(bam) | ||||
command <<< | command <<< | ||||
samtools index ${bam} | |||||
samtools index --help | |||||
print ${clean_bam_name} | |||||
samtools index ${bam} ${clean_bam_name}.bai | |||||
>>> | >>> | ||||
runtime { | runtime { |