1 changed files with 3 additions and 1 deletions
+ 3
- 1
tasks/index.wdl
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| @@ -7,7 +7,9 @@ task index { | |||
| String clean_bam_name = basename(bam) | |||
| command <<< | |||
| samtools index ${bam} | |||
| samtools index --help | |||
| print ${clean_bam_name} | |||
| samtools index ${bam} ${clean_bam_name}.bai | |||
| >>> | |||
| runtime { | |||
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