1 измененных файлов: 12 добавлений и 12 удалений
+ 12
- 12
tasks/rename_vcf.wdl
Просмотреть файл
| String disk_size | String disk_size | ||||
| command <<< | command <<< | ||||
| # cp ${vcf_D5} ${vcf_D5_name}_${project}_LCL5.vcf | |||||
| # cp ${vcf_D6} ${vcf_D6_name}_${project}_LCL6.vcf | |||||
| # cp ${vcf_F7} ${vcf_F7_name}_${project}_LCL7.vcf | |||||
| # cp ${vcf_M8} ${vcf_M8_name}_${project}_LCL8.vcf | |||||
| cp ${vcf_D5} vcf_D5.vcf.gz | |||||
| cp ${vcf_D6} vcf_D6.vcf.gz | |||||
| cp ${vcf_F7} vcf_F7.vcf.gz | |||||
| cp ${vcf_M8} vcf_M8.vcf.gz | |||||
| gunzip vcf_D5.vcf.gz > ${vcf_D5_name}_${project}_LCL5.vcf | |||||
| gunzip vcf_D6.vcf.gz > ${vcf_D6_name}_${project}_LCL6.vcf | |||||
| gunzip vcf_F7.vcf.gz > ${vcf_F7_name}_${project}_LCL7.vcf | |||||
| gunzip vcf_M8.vcf.gz > ${vcf_M8_name}_${project}_LCL8.vcf | |||||
| cp ${vcf_D5} ${vcf_D5_name}_${project}_LCL5.vcf | |||||
| cp ${vcf_D6} ${vcf_D6_name}_${project}_LCL6.vcf | |||||
| cp ${vcf_F7} ${vcf_F7_name}_${project}_LCL7.vcf | |||||
| cp ${vcf_M8} ${vcf_M8_name}_${project}_LCL8.vcf | |||||
| # cp ${vcf_D5} vcf_D5.vcf.gz | |||||
| # cp ${vcf_D6} vcf_D6.vcf.gz | |||||
| # cp ${vcf_F7} vcf_F7.vcf.gz | |||||
| # cp ${vcf_M8} vcf_M8.vcf.gz | |||||
| # gunzip vcf_D5.vcf.gz > ${vcf_D5_name}_${project}_LCL5.vcf | |||||
| # gunzip vcf_D6.vcf.gz > ${vcf_D6_name}_${project}_LCL6.vcf | |||||
| # gunzip vcf_F7.vcf.gz > ${vcf_F7_name}_${project}_LCL7.vcf | |||||
| # gunzip vcf_M8.vcf.gz > ${vcf_M8_name}_${project}_LCL8.vcf | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
Загрузка…