променени са 1 файла, в които са добавени 12 реда и са изтрити 12 реда
+ 12
- 12
tasks/rename_vcf.wdl
Целия файл
| @@ -15,18 +15,18 @@ task rename_vcf { | |||
| String disk_size | |||
| command <<< | |||
| # cp ${vcf_D5} ${vcf_D5_name}_${project}_LCL5.vcf | |||
| # cp ${vcf_D6} ${vcf_D6_name}_${project}_LCL6.vcf | |||
| # cp ${vcf_F7} ${vcf_F7_name}_${project}_LCL7.vcf | |||
| # cp ${vcf_M8} ${vcf_M8_name}_${project}_LCL8.vcf | |||
| cp ${vcf_D5} vcf_D5.vcf.gz | |||
| cp ${vcf_D6} vcf_D6.vcf.gz | |||
| cp ${vcf_F7} vcf_F7.vcf.gz | |||
| cp ${vcf_M8} vcf_M8.vcf.gz | |||
| gunzip vcf_D5.vcf.gz > ${vcf_D5_name}_${project}_LCL5.vcf | |||
| gunzip vcf_D6.vcf.gz > ${vcf_D6_name}_${project}_LCL6.vcf | |||
| gunzip vcf_F7.vcf.gz > ${vcf_F7_name}_${project}_LCL7.vcf | |||
| gunzip vcf_M8.vcf.gz > ${vcf_M8_name}_${project}_LCL8.vcf | |||
| cp ${vcf_D5} ${vcf_D5_name}_${project}_LCL5.vcf | |||
| cp ${vcf_D6} ${vcf_D6_name}_${project}_LCL6.vcf | |||
| cp ${vcf_F7} ${vcf_F7_name}_${project}_LCL7.vcf | |||
| cp ${vcf_M8} ${vcf_M8_name}_${project}_LCL8.vcf | |||
| # cp ${vcf_D5} vcf_D5.vcf.gz | |||
| # cp ${vcf_D6} vcf_D6.vcf.gz | |||
| # cp ${vcf_F7} vcf_F7.vcf.gz | |||
| # cp ${vcf_M8} vcf_M8.vcf.gz | |||
| # gunzip vcf_D5.vcf.gz > ${vcf_D5_name}_${project}_LCL5.vcf | |||
| # gunzip vcf_D6.vcf.gz > ${vcf_D6_name}_${project}_LCL6.vcf | |||
| # gunzip vcf_F7.vcf.gz > ${vcf_F7_name}_${project}_LCL7.vcf | |||
| # gunzip vcf_M8.vcf.gz > ${vcf_M8_name}_${project}_LCL8.vcf | |||
| >>> | |||
| runtime { | |||
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