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fix bug

master
YaqingLiu 4 年前
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f6c0d19ee5
共有 1 个文件被更改,包括 1 次插入1 次删除
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    -1
      tasks/picard.wdl

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tasks/picard.wdl 查看文件

@@ -14,7 +14,7 @@ task picard {
set -o pipefail
set -e
nt=$(nproc)
java -jar /usr/bin/picard/picard.jar LiftoverVcf I = ${vcf} O = ${sample}_picard.vcf REJECT=rejected_variants.vcf CHAIN = ${chain_dir}/${chain} R = ${ref_dir}/${fasta}
java -jar /usr/bin/picard/picard.jar LiftoverVcf -I ${vcf} -O ${sample}_picard.vcf -REJECT rejected_variants.vcf -CHAIN ${chain_dir}/${chain} -R ${ref_dir}/${fasta}
>>>
runtime {

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