first commit

workflow.wdl

@@ -29,8 +29,8 @@ workflow {{ project_name }} {
 
 	call mapping.mapping as mapping {
 		input: 
-		group=sample_id + '_' + type,
-		sample=sample_id + '_' + type,
+		group=sample_id,
+		sample=sample_id,
 		fastq_1=fastq_1,
 		fastq_2=fastq_2,
 		SENTIEON_INSTALL_DIR=SENTIEON_INSTALL_DIR,
@@ -49,7 +49,7 @@ workflow {{ project_name }} {
 		SENTIEON_LICENSE=SENTIEON_LICENSE,
 		sorted_bam=mapping.sorted_bam,
 		sorted_bam_index=mapping.sorted_bam_index,
-		sample=sample_id + '_' + type,
+		sample=sample_id,
 		docker=sentieon_docker,
 		disk_size=disk_size,
 		cluster_config=cluster_config