1 changed files with 3 additions and 3 deletions
+ 3
- 3
workflow.wdl
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| call mapping.mapping as mapping { | call mapping.mapping as mapping { | ||||
| input: | input: | ||||
| group=sample_id + '_' + type, | |||||
| sample=sample_id + '_' + type, | |||||
| group=sample_id, | |||||
| sample=sample_id, | |||||
| fastq_1=fastq_1, | fastq_1=fastq_1, | ||||
| fastq_2=fastq_2, | fastq_2=fastq_2, | ||||
| SENTIEON_INSTALL_DIR=SENTIEON_INSTALL_DIR, | SENTIEON_INSTALL_DIR=SENTIEON_INSTALL_DIR, | ||||
| SENTIEON_LICENSE=SENTIEON_LICENSE, | SENTIEON_LICENSE=SENTIEON_LICENSE, | ||||
| sorted_bam=mapping.sorted_bam, | sorted_bam=mapping.sorted_bam, | ||||
| sorted_bam_index=mapping.sorted_bam_index, | sorted_bam_index=mapping.sorted_bam_index, | ||||
| sample=sample_id + '_' + type, | |||||
| sample=sample_id, | |||||
| docker=sentieon_docker, | docker=sentieon_docker, | ||||
| disk_size=disk_size, | disk_size=disk_size, | ||||
| cluster_config=cluster_config | cluster_config=cluster_config |
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