test regions

tasks/Haplotyper.wdl

@@ -21,7 +21,7 @@ task Haplotyper {
 		set -e
 		export SENTIEON_LICENSE=192.168.0.55:8990
 		nt=$(nproc)
-		
+
 		if [ ${regions} ]; then
 		  INTERVAL="--interval ${regions} --interval_padding ${interval_padding}"
 		else
@@ -29,7 +29,7 @@ task Haplotyper {
 		fi
 
 		${SENTIEON_INSTALL_DIR}/bin/sentieon driver -r ${ref_dir}/${fasta} -t $nt \
-		-i ${recaled_bam} ${INTERVAL} \
+		-i ${recaled_bam} $INTERVAL \
 		--algo Haplotyper -d ${dbsnp_dir}/${dbsnp} ${sample}_hc.vcf
 	>>>