first commit

inputs

   "{{ project_name }}.fasta": "GRCh38.d1.vd1.fa",
   "{{ project_name }}.ref_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
   "{{ project_name }}.dbsnp": "dbsnp_146.hg38.vcf",
+  "{{ project_name }}.recaled_bam": "{{ recaled_bam }}",
   "{{ project_name }}.SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics",
   "{{ project_name }}.dbmills_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
   "{{ project_name }}.db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf",
   "{{ project_name }}.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
   "{{ project_name }}.dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
   "{{ project_name }}.sample": "{{ sample_name }}",
-  "{{ project_name }}.disk_size": 500
+  "{{ project_name }}.disk_size": "{{ disk_size }}", 
+  "{{ project_name }}.recaled_bam_index": "{{ recaled_bam_index }}"
 }