caller-test/inputs

{
  "{{ project_name }}.fasta": "GRCh38.d1.vd1.fa",
  "{{ project_name }}.ref_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
  "{{ project_name }}.dbsnp": "dbsnp_146.hg38.vcf",
  "{{ project_name }}.recaled_bam": "{{ recaled_bam }}",
  "{{ project_name }}.SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics",
  "{{ project_name }}.db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf",
  "{{ project_name }}.cluster_config": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc",
  "{{ project_name }}.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2020.10.07",
  "{{ project_name }}.dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
  "{{ project_name }}.sample": "{{ sample_id }}",
  "{{ project_name }}.disk_size": "500", 
  "{{ project_name }}.recaled_bam_index": "{{ recaled_bam_index }}",
  "{{ project_name }}.regions": "oss://pgx-reference-data/bed/cbcga/S07604514_Covered.bed",
  "{{ project_name }}.interval_padding": "0"
}