2 muutettua tiedostoa jossa 4 lisäystä ja 4 poistoa
+ 1
- 1
inputs
Näytä tiedosto
| @@ -1,5 +1,5 @@ | |||
| { | |||
| "{{ project_name }}.samples_file": "{{ samples_file }}", | |||
| "{{ project_name }}.input_samples_file": "{{ input_samples_file }}", | |||
| "{{ project_name }}.bed_file": "oss://pgx-reference-data/reference/bedtools/ERVmap_v2_all_sorted.bed", | |||
| "{{ project_name }}.bedtools.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc", | |||
| "{{ project_name }}.bedtools.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/bedtools:v2.27.1", | |||
+ 3
- 3
workflow.wdl
Näytä tiedosto
| @@ -2,11 +2,11 @@ import "./tasks/bedtools.wdl" as bedtools | |||
| workflow {{ project_name }} { | |||
| File samples_file | |||
| File input_samples_file | |||
| File bed_file | |||
| Array[Array[File]] input_samples_file = read_tsv(samples_file) | |||
| Array[Array[File]] input_samples = read_tsv(input_samples_file) | |||
| scatter (sample in input_samples_file) { | |||
| scatter (sample in input_samples) { | |||
| call bedtools.bedtools as bedtools { | |||
| input: | |||
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