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inputs
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| { | { | ||||
| "{{ project_name }}.samples_file": "{{ samples_file }}", | |||||
| "{{ project_name }}.input_samples_file": "{{ input_samples_file }}", | |||||
| "{{ project_name }}.bed_file": "oss://pgx-reference-data/reference/bedtools/ERVmap_v2_all_sorted.bed", | "{{ project_name }}.bed_file": "oss://pgx-reference-data/reference/bedtools/ERVmap_v2_all_sorted.bed", | ||||
| "{{ project_name }}.bedtools.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc", | "{{ project_name }}.bedtools.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc", | ||||
| "{{ project_name }}.bedtools.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/bedtools:v2.27.1", | "{{ project_name }}.bedtools.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/bedtools:v2.27.1", |
+ 3
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workflow.wdl
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| workflow {{ project_name }} { | workflow {{ project_name }} { | ||||
| File samples_file | |||||
| File input_samples_file | |||||
| File bed_file | File bed_file | ||||
| Array[Array[File]] input_samples_file = read_tsv(samples_file) | |||||
| Array[Array[File]] input_samples = read_tsv(input_samples_file) | |||||
| scatter (sample in input_samples_file) { | |||||
| scatter (sample in input_samples) { | |||||
| call bedtools.bedtools as bedtools { | call bedtools.bedtools as bedtools { | ||||
| input: | input: |
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