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workflow.wdl
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| @@ -2,9 +2,9 @@ import "./tasks/bedtools.wdl" as bedtools | |||
| workflow {{ project_name }} { | |||
| File input_samples | |||
| File input_samples_file | |||
| File bed_file | |||
| Array[File] bam = read_lines(input_samples) | |||
| Array[File] bam = read_lines(input_samples_file) | |||
| call bedtools.bedtools as bedtools { | |||
| input: | |||
| bam=bam, | |||
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