Calculate the bed coverage of multiple BAM files before and after dedup
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workflow.wdl 281B

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  1. import "./tasks/bedtools.wdl" as bedtools
  2. workflow {{ project_name }} {
  3. File input_samples_file
  4. File bed_file
  5. Array[File] input_samples = read_tsv(input_samples_file)
  6. call bedtools.bedtools as bedtools {
  7. input:
  8. input_samples=input_samples,
  9. bed_file=bed_file
  10. }
  11. }