Calculate the bed coverage of multiple BAM files before and after dedup
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inputs 589B

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  1. {
  2. "{{ project_name }}.input_samples_file": "{{ input_samples_file }}",
  3. "{{ project_name }}.bed_file": "oss://pgx-reference-data/reference/bedtools/ERVmap_v2_all_sorted.bed",
  4. "{{ project_name }}.bedtools.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
  5. "{{ project_name }}.bedtools.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/bedtools:v2.27.1",
  6. "{{ project_name }}.bedtools.disk_size": "{{disk_size}}"
  7. "{{ project_name }}.cp_bam.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
  8. "{{ project_name }}.cp_bam.disk_size": "{{disk_size}}"
  9. }