Browse Source

fix bug

master
YaqingLiu 4 years ago
parent
commit
bcbb340d5f
2 changed files with 26 additions and 1 deletions
  1. +25
    -0
      tasks/bcftools1.wdl
  2. +1
    -1
      workflow.wdl

+ 25
- 0
tasks/bcftools1.wdl View File

@@ -0,0 +1,25 @@
task bcftools {

Array[File] vcf
String docker
String cluster_config
String disk_size

command <<<
set -o pipefail
set -e
mkdir -p /cromwell_root/tmp/bcftools
echo $vcf > b
>>>

runtime {
docker: docker
cluster: cluster_config
systemDisk: "cloud_ssd 40"
dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
}
output {
File b = "b"
}
}

+ 1
- 1
workflow.wdl View File

@@ -1,4 +1,4 @@
import "./tasks/bcftools.wdl" as bcftools
import "./tasks/bcftools1.wdl" as bcftools

workflow {{ project_name }} {

Loading…
Cancel
Save