@@ -0,0 +1,25 @@ | |||
task bcftools { | |||
Array[File] vcf | |||
String docker | |||
String cluster_config | |||
String disk_size | |||
command <<< | |||
set -o pipefail | |||
set -e | |||
mkdir -p /cromwell_root/tmp/bcftools | |||
echo $vcf > b | |||
>>> | |||
runtime { | |||
docker: docker | |||
cluster: cluster_config | |||
systemDisk: "cloud_ssd 40" | |||
dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" | |||
} | |||
output { | |||
File b = "b" | |||
} | |||
} |
@@ -1,4 +1,4 @@ | |||
import "./tasks/bcftools.wdl" as bcftools | |||
import "./tasks/bcftools1.wdl" as bcftools | |||
workflow {{ project_name }} { | |||