fix bug

tasks/bcftools.wdl

@@ -10,12 +10,13 @@ task bcftools {
 		set -e
 		mkdir -p /cromwell_root/tmp/bcftools
 
-		for i in ${sep=" " vcf}
+		for i in $vcf
 		do
 			bcftools view $i -Oz -o /cromwell_root/tmp/bcftools/$(basename $i.gz)
 			bcftools index /cromwell_root/tmp/bcftools/$(basename $i.gz) -f
 		done
 
+		ls /cromwell_root/tmp/bcftools > a
 		cd /cromwell_root/tmp/bcftools
 		bcftools merge -m all -f PASS,. --force-samples *.gz | bcftools plugin fill-AN-AC | bcftools filter -i 'SUM(AC)>1' > panel_of_normal.vcf
 	>>>
@@ -29,5 +30,6 @@ task bcftools {
 	
 	output {
 		File panel_of_normal_vcf = "panel_of_normal.vcf"
+		File a = "a"
 	}
 }