1 changed files with 2 additions and 1 deletions
+ 2
- 1
tasks/bcftools1.wdl
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| @@ -12,7 +12,8 @@ task bcftools { | |||
| set -e | |||
| if [ ${PONmode} ]; then | |||
| bcftools view ${bcfpon} -Oz -o $(basename ${bcfpon}.gz) | |||
| name=$(basename ${bcfpon}) | |||
| bcftools view ${bcfpon} -Oz -o ${name}.gz | |||
| else | |||
| echo 1 | |||
| fi | |||
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