3 změnil soubory, kde provedl 4 přidání a 4 odebrání
+ 1
- 1
tasks/TNscope.wdl
Zobrazit soubor
| @@ -20,7 +20,7 @@ task TNscope { | |||
| Boolean PONmode | |||
| String? cosmic_vcf | |||
| File? cosmic_dir | |||
| File panel_of_normal_vcf | |||
| File? panel_of_normal_vcf | |||
| command <<< | |||
+ 1
- 1
tasks/TNseq.wdl
Zobrazit soubor
| @@ -18,7 +18,7 @@ task TNseq { | |||
| Boolean PONmode | |||
| String? cosmic_vcf | |||
| File? cosmic_dir | |||
| File panel_of_normal_vcf | |||
| File? panel_of_normal_vcf | |||
| command <<< | |||
+ 2
- 2
workflow.wdl
Zobrazit soubor
| @@ -92,7 +92,7 @@ workflow {{ project_name }} { | |||
| normal_name=sample[0] + "_normal", | |||
| cosmic_vcf=cosmic_vcf, | |||
| cosmic_dir=cosmic_dir, | |||
| panel_of_normal_vcf = bcftools.panel_of_normal_vcf, | |||
| #panel_of_normal_vcf = bcftools.panel_of_normal_vcf, | |||
| docker=sentieon_docker, | |||
| sample=sample[0], | |||
| disk_size=disk_size, | |||
| @@ -114,7 +114,7 @@ workflow {{ project_name }} { | |||
| normal_name=sample[0] + "_normal", | |||
| cosmic_vcf=cosmic_vcf, | |||
| cosmic_dir=cosmic_dir, | |||
| panel_of_normal_vcf = bcftools.panel_of_normal_vcf, | |||
| #panel_of_normal_vcf = bcftools.panel_of_normal_vcf, | |||
| docker=sentieon_docker, | |||
| sample=sample[0], | |||
| disk_size=disk_size, | |||
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