3 gewijzigde bestanden met toevoegingen van 4 en 4 verwijderingen
+ 1
- 1
tasks/TNscope.wdl
Bestand weergeven
| Boolean PONmode | Boolean PONmode | ||||
| String? cosmic_vcf | String? cosmic_vcf | ||||
| File? cosmic_dir | File? cosmic_dir | ||||
| File panel_of_normal_vcf | |||||
| File? panel_of_normal_vcf | |||||
| command <<< | command <<< |
+ 1
- 1
tasks/TNseq.wdl
Bestand weergeven
| Boolean PONmode | Boolean PONmode | ||||
| String? cosmic_vcf | String? cosmic_vcf | ||||
| File? cosmic_dir | File? cosmic_dir | ||||
| File panel_of_normal_vcf | |||||
| File? panel_of_normal_vcf | |||||
| command <<< | command <<< |
+ 2
- 2
workflow.wdl
Bestand weergeven
| normal_name=sample[0] + "_normal", | normal_name=sample[0] + "_normal", | ||||
| cosmic_vcf=cosmic_vcf, | cosmic_vcf=cosmic_vcf, | ||||
| cosmic_dir=cosmic_dir, | cosmic_dir=cosmic_dir, | ||||
| panel_of_normal_vcf = bcftools.panel_of_normal_vcf, | |||||
| #panel_of_normal_vcf = bcftools.panel_of_normal_vcf, | |||||
| docker=sentieon_docker, | docker=sentieon_docker, | ||||
| sample=sample[0], | sample=sample[0], | ||||
| disk_size=disk_size, | disk_size=disk_size, | ||||
| normal_name=sample[0] + "_normal", | normal_name=sample[0] + "_normal", | ||||
| cosmic_vcf=cosmic_vcf, | cosmic_vcf=cosmic_vcf, | ||||
| cosmic_dir=cosmic_dir, | cosmic_dir=cosmic_dir, | ||||
| panel_of_normal_vcf = bcftools.panel_of_normal_vcf, | |||||
| #panel_of_normal_vcf = bcftools.panel_of_normal_vcf, | |||||
| docker=sentieon_docker, | docker=sentieon_docker, | ||||
| sample=sample[0], | sample=sample[0], | ||||
| disk_size=disk_size, | disk_size=disk_size, |
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