test

tasks/arriba.wdl

@@ -1,4 +1,4 @@
-task arriba{
+task arriba {
     String sample_id
     File fastq1
     File fastq2
@@ -16,12 +16,12 @@ task arriba{
         set -e
 
         mkdir ./output/
-        echo ${star_index_dir} >output/a.txt
-        echo ${fastq1} >> output/a.txt
-        echo ${fastq2} >> output/a.txt
-        echo ${sample_id} >> output/a.txt
-        echo ${assembly_fa} >> output/a.txt
-        echo ${annotation_gtf} >> output/a.txt
+        echo ${star_index_dir} > ./output/a.txt
+        echo ${fastq1} >> ./output/a.txt
+        echo ${fastq2} >> ./output/a.txt
+        echo ${sample_id} >> ./output/a.txt
+        echo ${assembly_fa} >> ./output/a.txt
+        echo ${annotation_gtf} >> ./output/a.txt