1 changed files with 7 additions and 7 deletions
+ 7
- 7
tasks/arriba.wdl
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| task arriba{ | |||||
| task arriba { | |||||
| String sample_id | String sample_id | ||||
| File fastq1 | File fastq1 | ||||
| File fastq2 | File fastq2 | ||||
| set -e | set -e | ||||
| mkdir ./output/ | mkdir ./output/ | ||||
| echo ${star_index_dir} >output/a.txt | |||||
| echo ${fastq1} >> output/a.txt | |||||
| echo ${fastq2} >> output/a.txt | |||||
| echo ${sample_id} >> output/a.txt | |||||
| echo ${assembly_fa} >> output/a.txt | |||||
| echo ${annotation_gtf} >> output/a.txt | |||||
| echo ${star_index_dir} > ./output/a.txt | |||||
| echo ${fastq1} >> ./output/a.txt | |||||
| echo ${fastq2} >> ./output/a.txt | |||||
| echo ${sample_id} >> ./output/a.txt | |||||
| echo ${assembly_fa} >> ./output/a.txt | |||||
| echo ${annotation_gtf} >> ./output/a.txt | |||||
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