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fix(mapping): duplex_umi does not reference any declaration

master
YaqingLiu 2 年之前
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77f5f1efc5
共有 2 個文件被更改,包括 7 次插入1 次删除
  1. +2
    -0
      tasks/mapping.wdl
  2. +5
    -1
      workflow.wdl

+ 2
- 0
tasks/mapping.wdl 查看文件

String group String group
String sample String sample
String platform String platform
String? duplex_umi
String? read_structure
String docker String docker
String cluster_config String cluster_config
String disk_size String disk_size

+ 5
- 1
workflow.wdl 查看文件

fastq_1=tumor_fastq_1, fastq_1=tumor_fastq_1,
fastq_2=tumor_fastq_2, fastq_2=tumor_fastq_2,
SENTIEON_LICENSE=SENTIEON_LICENSE, SENTIEON_LICENSE=SENTIEON_LICENSE,
pl=pl,
duplex_umi=duplex_umi,
read_structure=read_structure,
platform=platform,
fasta=fasta, fasta=fasta,
ref_dir=ref_dir, ref_dir=ref_dir,
docker=sentieon_docker, docker=sentieon_docker,
fastq_1=normal_fastq_1, fastq_1=normal_fastq_1,
fastq_2=normal_fastq_2, fastq_2=normal_fastq_2,
SENTIEON_LICENSE=SENTIEON_LICENSE, SENTIEON_LICENSE=SENTIEON_LICENSE,
duplex_umi=duplex_umi,
read_structure=read_structure,
platform=platform, platform=platform,
fasta=fasta, fasta=fasta,
ref_dir=ref_dir, ref_dir=ref_dir,

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