Varscan2/defaults

{
    "fasta": "GRCh38.d1.vd1.fa",
    "ref_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
    "dbsnp": "dbsnp_146.hg38.vcf",
    "dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
    "dbmills_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
    "db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf",
    "annovar_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/annovar:v2018.04",
    "maftools_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/r-base:4.0.2",
    "varscan_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/varscan2:v2.4.3",
    "database": "oss://pgx-reference-data/annovar_hg38/",
    "regions": "oss://pgx-reference-data/reference/wes_bedfiles/agilent_v6/SureSelect_Human_All_Exon_V6_r2.bed",
    "disk_size": "200",
    "cluster_config": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc"
}