task varscan { | |||||
task somatic { | |||||
String sample | String sample | ||||
File normal_bam | File normal_bam | ||||
File normal_bam_index | File normal_bam_index | ||||
File tumor_bam | File tumor_bam | ||||
File tumor_bam_index | File tumor_bam_index | ||||
File ref_dir | File ref_dir | ||||
String fasta | String fasta | ||||
String docker | String docker |