2 změnil soubory, kde provedl 7 přidání a 7 odebrání
+ 6
- 6
samples.json
Zobrazit soubor
| @@ -1,9 +1,9 @@ | |||
| { | |||
| "vcf": [ | |||
| ["oss://choppy-cromwell-result/test-choppy/..._pon.vcf",] | |||
| ["oss://choppy-cromwell-result/test-choppy/..._pon.vcf",] | |||
| ["oss://choppy-cromwell-result/test-choppy/..._pon.vcf",] | |||
| "normal_recaled_bam_bai": [ | |||
| ["CBCGA372775_tumor", "oss://pgx-result/liuyaqing/CBCGA/dedup/CBCGA372775_tumor.sorted.deduped.bam","oss://pgx-result/liuyaqing/CBCGA/dedup/CBCGA372775_tumor.sorted.deduped.bam.bai"], | |||
| ["CBCGA380400_tumor","oss://pgx-result/liuyaqing/CBCGA/dedup/CBCGA380400_tumor.sorted.deduped.bam","oss://pgx-result/liuyaqing/CBCGA/dedup/CBCGA380400_tumor.sorted.deduped.bam.bai"], | |||
| ["CBCGA382368_tumor","oss://pgx-result/liuyaqing/CBCGA/dedup/CBCGA382368_tumor.sorted.deduped.bam","oss://pgx-result/liuyaqing/CBCGA/dedup/CBCGA382368_tumor.sorted.deduped.bam.bai"] | |||
| ], | |||
| "panel_id": "PON_20210407", | |||
| "sample_id": "PON_20210407" | |||
| "panel_id": "PON_20210407_test", | |||
| "sample_id": "PON_20210407_test" | |||
| } | |||
+ 1
- 1
workflow.wdl
Zobrazit soubor
| @@ -14,7 +14,7 @@ workflow {{ project_name }} { | |||
| String dbsnp | |||
| File regions | |||
| Array[Array[File]] normal_recaled_bam_bai | |||
| Array[File] normal_recaled_bam_bai | |||
| String sentieon_docker | |||
| String cluster_config | |||
| String disk_size | |||
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