@@ -1,5 +1,5 @@ | |||
{ | |||
"{{ project_name }}.sample_id": "{{ sample_id }}", | |||
"{{ project_name }}.panel_id": "{{ panel_id }}", | |||
"{{ project_name }}.normal_recaled_bam_bai": "{{ normal_recaled_bam_bai | tojson }}", | |||
"{{ project_name }}.fasta": "{{ fasta }}", | |||
"{{ project_name }}.ref_dir": "{{ ref_dir }}", |
@@ -4,7 +4,7 @@ import "./tasks/mergePoN.wdl" as mergePoN | |||
workflow {{ project_name }} { | |||
String SENTIEON_INSTALL_DIR | |||
String SENTIEON_LICENSE | |||
String sample_id | |||
String panel_id | |||
File ref_dir | |||
String fasta | |||
@@ -61,7 +61,7 @@ workflow {{ project_name }} { | |||
disk_size=disk_size, | |||
cluster_config=cluster_config | |||
} | |||
call mergePoN.mergePoN as mergePoN_TNscope { | |||
input: | |||
pon_vcfs=TNscope_pon_vcfs, |