2 changed files with 3 additions and 3 deletions
+ 1
- 1
inputs
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| { | { | ||||
| "{{ project_name }}.sample_id": "{{ sample_id }}", | |||||
| "{{ project_name }}.panel_id": "{{ panel_id }}", | |||||
| "{{ project_name }}.normal_recaled_bam_bai": "{{ normal_recaled_bam_bai | tojson }}", | "{{ project_name }}.normal_recaled_bam_bai": "{{ normal_recaled_bam_bai | tojson }}", | ||||
| "{{ project_name }}.fasta": "{{ fasta }}", | "{{ project_name }}.fasta": "{{ fasta }}", | ||||
| "{{ project_name }}.ref_dir": "{{ ref_dir }}", | "{{ project_name }}.ref_dir": "{{ ref_dir }}", |
+ 2
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workflow.wdl
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| workflow {{ project_name }} { | workflow {{ project_name }} { | ||||
| String SENTIEON_INSTALL_DIR | String SENTIEON_INSTALL_DIR | ||||
| String SENTIEON_LICENSE | String SENTIEON_LICENSE | ||||
| String sample_id | |||||
| String panel_id | |||||
| File ref_dir | File ref_dir | ||||
| String fasta | String fasta | ||||
| disk_size=disk_size, | disk_size=disk_size, | ||||
| cluster_config=cluster_config | cluster_config=cluster_config | ||||
| } | } | ||||
| call mergePoN.mergePoN as mergePoN_TNscope { | call mergePoN.mergePoN as mergePoN_TNscope { | ||||
| input: | input: | ||||
| pon_vcfs=TNscope_pon_vcfs, | pon_vcfs=TNscope_pon_vcfs, |
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