YaqingLiu пре 4 година
родитељ
комит
45a0f764e7
2 измењених фајлова са 3 додато и 3 уклоњено
  1. +1
    -1
      inputs
  2. +2
    -2
      workflow.wdl

+ 1
- 1
inputs Прегледај датотеку

{ {
"{{ project_name }}.sample_id": "{{ sample_id }}",
"{{ project_name }}.panel_id": "{{ panel_id }}",
"{{ project_name }}.normal_recaled_bam_bai": "{{ normal_recaled_bam_bai | tojson }}", "{{ project_name }}.normal_recaled_bam_bai": "{{ normal_recaled_bam_bai | tojson }}",
"{{ project_name }}.fasta": "{{ fasta }}", "{{ project_name }}.fasta": "{{ fasta }}",
"{{ project_name }}.ref_dir": "{{ ref_dir }}", "{{ project_name }}.ref_dir": "{{ ref_dir }}",

+ 2
- 2
workflow.wdl Прегледај датотеку

workflow {{ project_name }} { workflow {{ project_name }} {
String SENTIEON_INSTALL_DIR String SENTIEON_INSTALL_DIR
String SENTIEON_LICENSE String SENTIEON_LICENSE
String sample_id
String panel_id


File ref_dir File ref_dir
String fasta String fasta
disk_size=disk_size, disk_size=disk_size,
cluster_config=cluster_config cluster_config=cluster_config
} }
call mergePoN.mergePoN as mergePoN_TNscope { call mergePoN.mergePoN as mergePoN_TNscope {
input: input:
pon_vcfs=TNscope_pon_vcfs, pon_vcfs=TNscope_pon_vcfs,

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