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NGSCheckMate_parallel
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Generating a VAF file from one FASTQ file parallelly. And then parallelized read the set of VAF files by vaf_ncm.py.
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NGSCheckMate_parallel/defaults

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  1. {

  2.   "subsampling_rate": "1",

  3.   "cluster_config": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc",

  4.   "disk_size": "100",

  5.   "docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/ngscheckmate:v1.0.0"

  6. }