Generating a VAF file from one FASTQ file parallelly. And then parallelized read the set of VAF files by vaf_ncm.py.
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  1. {
  2. "{{ project_name }}.sample_id": {{ sample_id | tojson }},
  3. "{{ project_name }}.fastq1": {{ fastq1 | tojson }},
  4. "{{ project_name }}.fastq2": {{ fastq2 | tojson }},
  5. "{{ project_name }}.subsampling_rate": "{{ subsampling_rate }}",
  6. "{{ project_name }}.docker": "{{ docker }}",
  7. "{{ project_name }}.disk_size": "{{ disk_size }}",
  8. "{{ project_name }}.cluster_config": "{{ cluster_config }}"
  9. }