Generating a VAF file from one FASTQ file parallelly. And then parallelized read the set of VAF files by vaf_ncm.py.
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  1. {
  2. "{{ project_name }}.out_dir": "String (optional, default = \"./\")",
  3. "{{ project_name }}.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/ngscheckmate:v1.0.0",
  4. "{{ project_name }}.input_file": "{{ input_file }}",
  5. "{{ project_name }}.fastq_dir": "{{ fastq_dir }}",
  6. "{{ project_name }}.disk_size": "{{ disk_size }}",
  7. "{{ project_name }}.cluster_config": "{{ cluster_config }}"
  8. }