NGSCheckMate_parallel/workflow.wdl

import "./tasks/NGScheckMates.wdl" as NGScheckMates

workflow {{ project_name }} {
	File fastq_dir
	File input_file
	String docker
	String out_dir = "./"
	String cluster_config
	String disk_size

	call NGScheckMates.NGScheckMates as NGScheckMates {
		input:
		fastq_dir=fastq_dir,
		input_file=input_file,
		out_dir=out_dir,
		docker=docker,
		disk_size=disk_size,
		cluster_config=cluster_config
	}
}