NGSCheckMate_parallel/workflow.wdl

import "./tasks/ngscheckmate_fastq.wdl" as ngscheckmate_fastq

workflow {{ project_name }} {
  
  String sample_id
	File fastq1
	File fastq2
  String subsampling_rate
	String docker
	String cluster_config
	String disk_size

  Array[File] fastq1_arr = fastq1
  Array[File] fastq2_arr = fastq2

  scatter (idx in range(length(fastq1_arr))) {
    call ngscheckmate_fastq.ngscheckmate_fastq as ngscheckmate_fastq {
      input:
      sample_id=sample_id,
      fastq1=fastq1_arr[idx],
      fastq2=fastq2_arr[idx],
      subsampling_rate=subsampling_rate,
      docker=docker,
      disk_size=disk_size,
      cluster_config=cluster_config
    }
  }
}