export NCM_HOME=/opt/NGSCheckMate | export NCM_HOME=/opt/NGSCheckMate | ||||
python /opt/NGSCheckMate/ncm_fastq.py -l ${input_file} -pt /opt/NGSCheckMate/SNP/SNP.pt -O '.' -p $nt -f -nz | python /opt/NGSCheckMate/ncm_fastq.py -l ${input_file} -pt /opt/NGSCheckMate/SNP/SNP.pt -O '.' -p $nt -f -nz | ||||
pwd > wd.txt | pwd > wd.txt | ||||
ls >> wd.txt | |||||
>>> | >>> | ||||
runtime { | runtime { |