1 changed files with 4 additions and 4 deletions
+ 4
- 4
tasks/vaf_ncm.wdl
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| command <<< | command <<< | ||||
| set -o pipefail | set -o pipefail | ||||
| set -e | set -e | ||||
| nt=$(nproc) | |||||
| #nt=$(nproc) | |||||
| export NCM_HOME=/opt/NGSCheckMate | export NCM_HOME=/opt/NGSCheckMate | ||||
| mkdir -p /ncm/fastq_vaf | |||||
| cp ${sep=" " vaf} /ncm/fastq_vaf | |||||
| mkdir -p /ncm/fastq_vaf/ | |||||
| cp ${sep=" " vaf} /ncm/fastq_vaf/ | |||||
| python /opt/NGSCheckMate/vaf_ncm.py -I /ncm/fastq_vaf/ -O '.' -nz $nt | |||||
| python /opt/NGSCheckMate/vaf_ncm.py -I /ncm/fastq_vaf/ -O '.' | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
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