test workflow

tasks/ngscheckmate_fastq.wdl

@@ -2,7 +2,7 @@ task ngscheckmate_fastq {
   
   File fq1
   File fq2
-  String basename(fq1, "_R1.fastq.gz")
+  String output_id=basename(fq1, "_R1.fastq.gz")
   String subsampling_rate
   String docker
   String cluster_config