Alter output_id

tasks/fastq_ncm.wdl

@@ -2,7 +2,7 @@ task fastq_ncm {
   
   File fq1
   File fq2
-  String output_id
+  String out_id
   String subsampling_rate
   String docker
   String cluster_config
@@ -13,7 +13,7 @@ task fastq_ncm {
     set -e
     nt=$(nproc)
     export NCM_HOME=/opt/NGSCheckMate
-    /opt/NGSCheckMate/ngscheckmate_fastq -1 ${fq1} -2 ${fq2} /opt/NGSCheckMate/SNP/SNP.pt -p $nt -s ${subsampling_rate} > ${output_id}.vaf
+    /opt/NGSCheckMate/ngscheckmate_fastq -1 ${fq1} -2 ${fq2} /opt/NGSCheckMate/SNP/SNP.pt -p $nt -s ${subsampling_rate} > ${out_id}.vaf
   >>>
 
   runtime {
@@ -23,6 +23,6 @@ task fastq_ncm {
       dataDisk:"cloud_ssd " + disk_size + " /cromwell_root/"
   }
   output {
-    File vaf="${output_id}.vaf"
+    File vaf="${out_id}.vaf"
   }
 }

workflow.wdl

@@ -17,7 +17,7 @@ workflow {{ project_name }} {
       input:
       fq1=fastq1[idx],
       fq2=fastq2[idx],
-      output_id=output_id[idx],
+      out_id=output_id[idx],
       subsampling_rate=subsampling_rate,
       docker=docker,
       disk_size=disk_size,