command line · 3d73da0f08 - Choppy for Reproducible Omics Pipeline

command line

master

LUYAO REN 6 years ago

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9ac1919adb

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3d73da0f08

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tasks/NGScheckMates.wdlView File
								
																	set -o pipefail
															
																	set -o pipefail
														
																	set -e
															
																	set -e
														
																	nt=$(nproc)
															
																	nt=$(nproc)
														
																	export NCM_HOME=/opt/NGSCheckMate
														
																	python /opt/NGSCheckMate/ncm_fastq.py -l ${input_file} -pt /opt/NGSCheckMate/SNP/SNP.pt -O '.' -p $nt -f -nz
															
																	python /opt/NGSCheckMate/ncm_fastq.py -l ${input_file} -pt /opt/NGSCheckMate/SNP/SNP.pt -O '.' -p $nt -f -nz
														
																>>>
															
																>>>