1 mainītis faili ar 1 papildinājumiem un 1 dzēšanām
+ 1
- 1
tasks/fastq_ncm.wdl
Parādīt failu
| @@ -13,7 +13,7 @@ task fastq_ncm { | |||
| set -e | |||
| nt=$(nproc) | |||
| export NCM_HOME=/opt/NGSCheckMate | |||
| python /opt/NGSCheckMate/ngscheckmate_fastq -1 ${fq1} -2 ${fq2} /opt/NGSCheckMate/SNP/SNP.pt -p $nt -s ${subsampling_rate} > ${output_id}.vaf | |||
| /opt/NGSCheckMate/ngscheckmate_fastq -1 ${fq1} -2 ${fq2} /opt/NGSCheckMate/SNP/SNP.pt -p $nt -s ${subsampling_rate} > ${output_id}.vaf | |||
| >>> | |||
| runtime { | |||
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