1 changed files with 2 additions and 2 deletions
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tasks/vaf_ncm.wdl
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| set -e | set -e | ||||
| nt=$(nproc) | nt=$(nproc) | ||||
| export NCM_HOME=/opt/NGSCheckMate | export NCM_HOME=/opt/NGSCheckMate | ||||
| mkdir -p /ncm/fastq_vaf | mkdir -p /ncm/fastq_vaf | ||||
| cp ${sep=" " vaf} /ncm/fastq_vaf | cp ${sep=" " vaf} /ncm/fastq_vaf | ||||
| python /opt/NGSCheckMate/vaf_ncm.py -f -I /ncm/fastq_vaf/ -O . -nz $nt | |||||
| python /opt/NGSCheckMate/vaf_ncm.py -I /ncm/fastq_vaf/ -O '.'' -nz $nt | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
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