set -o pipefail | set -o pipefail | ||||
set -e | set -e | ||||
nt=$(nproc) | nt=$(nproc) | ||||
python ncm_fastq.py -l ${input_file} -pt SNP/SNP.pt –O './' -p $nt -s 0.3 -f | |||||
python /opt/NGSCheckMate/ncm_fastq.py -l ${input_file} -pt /opt/NGSCheckMate/SNP/SNP.pt –O './' -p $nt -s 0.3 -f | |||||
>>> | >>> | ||||
runtime { | runtime { |