YaqingLiu
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CNVkit
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Infer and visualize copy number from high-throughput DNA sequencing data.
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CNVkit/defaults

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  1. {

  2.     "fasta": "GRCh38.d1.vd1.fa",

  3.     "ref_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",

  4.     "docker": "registry.cn-hangzhou.aliyuncs.com/pgx-docker-registry/cnvkit:0.9.7",

  5.     "disk_size": "200",

  6.     "cluster_config": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc",

  7.     "bed": "oss://pgx-reference-data/reference/wes_bedfiles/agilent_v6/SureSelect_Human_All_Exon_V6_r2.bed"

  8. }