CNVkit/defaults

{
    "fasta": "oss://pgx-reference-data/GRCh38.d1.vd1/GRCh38.d1.vd1.fa",
    "faidx": "oss://pgx-reference-data/GRCh38.d1.vd1/GRCh38.d1.vd1.fa.fai",
    "docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/cnvkit:0.9.7",
    "disk_size": "400",
    "cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",
    "bed": "oss://pgx-reference-data/reference/wes_bedfiles/agilent_v6/SureSelect_Human_All_Exon_V6_r2.bed",
    "ref_flat": "oss://pgx-reference-data/GRCh38.d1.vd1/refFlat.txt",
    "min_gap_size": "5000"
}