antitarget-avg-size

README.md

@@ -5,7 +5,7 @@
 > E-mail: yaqing.liu@outlook.com
 >
 
-CNVkit is a Python library and command-line software toolkit to infer and visualize copy number from high-throughput DNA sequencing data. It is designed for use with hybrid capture, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina and Ion Torrent.
+CNVkit is a Python library and command-line software toolkit to infer and visualize copy number from high-throughput DNA sequencing data. It is designed for use with **hybrid capture**, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina and Ion Torrent.
 
 Official document: https://cnvkit.readthedocs.io/en/stable/index.html
 ## Install

tasks/batch.wdl

@@ -43,7 +43,7 @@ task batch {
         --fasta hg38.fa ${reference_opt} \
         --output-reference ${sample_id}.reference.cnn \
         --output-dir ./results/ \
-        --drop-low-coverage --diagram --scatter --antitarget-avg-size 200000
+        --drop-low-coverage --diagram --scatter
     >>>
 
     runtime {