test

tasks/access.wdl

@@ -8,12 +8,12 @@ task access {
     String cluster_config
     String disk_size
 
-    command <<
-        #if [ ${method}=="amplicon" ]; then
+    command <<<
+        if [ ${method}=="amplicon" ]; then
             cp ${bed} access-mappable.bed
-        #else
-        #    cnvkit.py access -s ${min_gap_size} -o access-mappable.bed ${fasta}
-        #fi
+        else
+            cnvkit.py access -s ${min_gap_size} -o access-mappable.bed ${fasta}
+        fi
     >>>
 
     runtime {