1 changed files with 4 additions and 4 deletions
+ 4
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tasks/export.wdl
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| String disk_size | String disk_size | ||||
| command <<< | command <<< | ||||
| mkdir -p /cromwell_root/tmp/cnvkit | |||||
| cp -r ${sep=" " results} /cromwell_root/tmp/cnvkit | |||||
| cd /cromwell_root/tmp/cnvkit | |||||
| #mkdir -p /cromwell_root/tmp/cnvkit | |||||
| cp -r ${sep=" " results} . | |||||
| #cd /cromwell_root/tmp/cnvkit | |||||
| # this version app just provides seg | # this version app just provides seg | ||||
| cnvkit.py export seg *.cns -o /cromwell_root/tmp/cnvkit/${sample_id}.seg | |||||
| cnvkit.py export seg *.cns -o ${sample_id}.seg | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
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