YuanfengZhang
3 years ago
1 changed files with 2 additions and 2 deletions
+ 2
- 2
tasks/pre.wdl
View File
| if [[ ${sample} =~ "LCL7" ]]; then | if [[ ${sample} =~ "LCL7" ]]; then | ||||
| /opt/hap.py/bin/pre.py ${vcf} ${sample}vcf.gz \ | /opt/hap.py/bin/pre.py ${vcf} ${sample}vcf.gz \ | ||||
| -r ${ref_dir}/${fasta} -D -L --fixchr --gender male --threads $nt --logfile ${sample}.normalization.log | |||||
| -r ${HGREF} -D -L --fixchr --gender male --threads $nt --logfile ${sample}.normalization.log | |||||
| else | else | ||||
| /opt/hap.py/bin/pre.py ${vcf} ${sample}vcf.gz \ | /opt/hap.py/bin/pre.py ${vcf} ${sample}vcf.gz \ | ||||
| -r ${ref_dir}/${fasta} -D -L --fixchr --gender female --threads $nt --logfile ${sample}.normalization.log | |||||
| -r ${HGREF} -D -L --fixchr --gender female --threads $nt --logfile ${sample}.normalization.log | |||||
| fi | fi | ||||
| >>> | >>> |
Loading…