YuanfengZhang
3 vuotta sitten
1 muutettua tiedostoa jossa 2 lisäystä ja 2 poistoa
+ 2
- 2
tasks/pre.wdl
Näytä tiedosto
| @@ -20,10 +20,10 @@ task pre { | |||
| if [[ ${sample} =~ "LCL7" ]]; then | |||
| /opt/hap.py/bin/pre.py ${vcf} ${sample}vcf.gz \ | |||
| -r ${ref_dir}/${fasta} -D -L --fixchr --gender male --threads $nt --logfile ${sample}.normalization.log | |||
| -r ${HGREF} -D -L --fixchr --gender male --threads $nt --logfile ${sample}.normalization.log | |||
| else | |||
| /opt/hap.py/bin/pre.py ${vcf} ${sample}vcf.gz \ | |||
| -r ${ref_dir}/${fasta} -D -L --fixchr --gender female --threads $nt --logfile ${sample}.normalization.log | |||
| -r ${HGREF} -D -L --fixchr --gender female --threads $nt --logfile ${sample}.normalization.log | |||
| fi | |||
| >>> | |||
Loading…