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README.md

@@ -306,11 +306,17 @@ Rscript RNAseq_2_pca.R -o -i ballgown_geneexp_log2fpkm_floor0p01_c3r58395_2019-0
 
 有group信息：
 
-``` @scatter-plot(dataFile='/yourdir/data/rnaseq_pca.rds', dataType='rds', xAxis='PC1', xTitle='',yAxis='PC2',yTitle="",colorAttr='group1')```
+```
+ @scatter-plot(dataFile='/yourdir/data/rnaseq_pca.rds', dataType='rds', xAxis='PC1', xTitle='',yAxis='PC2',yTitle="",colorAttr='group1')
+```
+
+
 
 无group信息：
 
-``` @scatter-plot(dataFile='/yourdir/data/rnaseq_pca.rds', dataType='rds', xAxis='PC1', xTitle='',yAxis='PC2',yTitle='')```
+```
+ @scatter-plot(dataFile='/yourdir/data/rnaseq_pca.rds', dataType='rds', xAxis='PC1', xTitle='',yAxis='PC2',yTitle='')
+```
 
 
 
@@ -386,7 +392,9 @@ Rscript RNAseq_3_cor.R -o -i ballgown_geneexp_log2fpkm_floor0p01_c3r58395_2019-0
 
 ### choppy report
 
-```@heatmap-d3(dataFile='/yourdir/data/rnaseq_cor.rds', dataType='rds', labCol='TRUE')```
+```
+@heatmap-d3(dataFile='/yourdir/data/rnaseq_cor.rds', dataType='rds', labCol='TRUE')
+```
 
 
 
@@ -506,15 +514,21 @@ Rscript RNAseq_4_pwDEG.R  -i example_geneexp_log2fpkm_floor0p01_c13r58395_2019-0
 
 1. 火山图
 
-   ```@scatter-plot(dataFile='/yourdir/data/rnaseq_AvsB_degs.rds', dataType='rds', xAxis='logfc', xTitle='log2FC',yAxis='log10p',yTitle='-log10 (p)', colorAttr='sigene')```
+   ```
+   @scatter-plot(dataFile='/yourdir/data/rnaseq_AvsB_degs.rds', dataType='rds', xAxis='logfc', xTitle='log2FC',yAxis='log10p',yTitle='-log10 (p)', colorAttr='sigene')
+   ```
 
 2. 差异基因清单表
 
-   ```@data-table-js(dataUrl='/yourdir/data/rnaseq_degs_acrossgroups.csv')```
+   ```
+   @data-table-js(dataUrl='/yourdir/data/rnaseq_degs_acrossgroups.csv')
+   ```
 
 3. 整体差异基因数量
 
-   ``` @stack-barplot-r(dataFile='/yourdir/data/rnaseq_degs_stats.rds', dataType='rds', xAxis='versus', yAxis='number',labelAttr='type',barPos='stack') ```
+   ```
+   @stack-barplot-r(dataFile='/yourdir/data/rnaseq_degs_stats.rds', dataType='rds', xAxis='versus', yAxis='number',labelAttr='type',barPos='stack') 
+   ```
 
 
 
@@ -701,9 +715,10 @@ Rscript RNAseq_6_enrichfunc.R -i rnaseq_degs_acrossgroups.csv
 
 ### choppy report
 
-``` @data-table-js(dataUrl='/yourdir/data/rnaseq_GOenrich.csv')```
-
-```@data-table-js(dataUrl='/yourdir/data/rnaseq_KEGGenrich.csv')```
+```
+@data-table-js(dataUrl='/yourdir/data/rnaseq_GOenrich.csv')
+@data-table-js(dataUrl='/yourdir/data/rnaseq_KEGGenrich.csv')
+```